The tutorials available for ProtoMS can be found below. For more information, please check the ProtoMS manual or documentation (provided with the download of ProtoMS).
In all tutorials it is assumed that
$PROTOMSHOME is set to the installation path of ProtoMS
A visualization software is required in most tutorials to asses results of simulations as well as certain stages of set-up. Throughout the tutorials, VMD is recommemded. Nevertheless, please feel free to use the software of your choice.Current version of ProtoMS 3.3